Domain ID e1jynC5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000094664
Type: Automatic domain
Parent: e1jz8A5
Range: C:334-625
Ligands: DMS LAT MG NA
PDB: 1jyn
PDB Description: Beta-Galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e1jynC5

Domains in the same chain:

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e1jynC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jynC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jynC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e1jynA1 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jynA2 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynA5 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jynA3 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynA4 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1jynB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jynB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jynB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1jynC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jynC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jynC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1jynD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jynD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jynD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jynD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e1jynC5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jynB5 C:x,y,z->B:X,Y,Z TIM barrels Interaction Interface Pymol
e1jynB1 C:x,y,z->B:X,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e1jynB2 C:x,y,z->B:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e1jynD5 C:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e1jynB1 C:X-1/2,-Y+1/2,-Z->B:x,y,z Galactose-binding domain-like Interaction Interface Pymol