Domain ID e1jyvC5

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  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000094704
Type: Automatic domain
Parent: e1jz8A5
Range: C:334-625
Ligands: 145 DMS MG NA
PDB: 1jyv
PDB Description: Beta-Galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species: Escherichia coli

Structure of domain e1jyvC5

Domains in the same chain:

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e1jyvC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jyvC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jyvC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e1jyvA1 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jyvA2 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvA5 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jyvA3 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvA4 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1jyvB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jyvB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jyvB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1jyvC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jyvC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jyvC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e1jyvD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e1jyvD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e1jyvD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1jyvD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e1jyvC5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1jyvB5 C:x,y,z->B:X,Y,Z TIM barrels Interaction Interface Pymol
e1jyvB2 C:x,y,z->B:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e1jyvB1 C:x,y,z->B:X,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e1jyvD5 C:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e1jyvB1 C:X-1/2,-Y+1/2,-Z->B:x,y,z Galactose-binding domain-like Interaction Interface Pymol