Domain ID e1k8aV1

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  • A: few secondary structure elements
  • X: Glucocorticoid receptor-like
  • H: LIM domain-like
  • T: LIM domain-like
  • F: Ribosomal_L24e
UID: 000089626
Type: Automatic domain
Parent: e1vqoU1
Range: V:4-56
Ligands: CD
PDB: 1k8a
PDB Description: RIBOSOMAL PROTEIN L24E
UniProt: P14116
Species: Haloarcula marismortui

Structure of domain e1k8aV1

Domains in the same chain:

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e1k8aV1 V:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like

Domains in the same PDB:

e1k8a11 1:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1k8a21 2:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1k8a31 3:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1k8a41 4:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1k8aC1 C:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1k8aC2 C:91-237 SH3 SH3 SH3
e1k8aD1 D:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1k8aE1 E:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1k8aF1 F:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1k8aG1 G:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1k8aG2 G:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1k8aH1 H:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1k8aI1 I:12-29,I:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1k8aJ1 J:1-167 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1k8aK1 K:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1k8aL1 L:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1k8aM1 M:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1k8aN1 N:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1k8aO1 O:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1k8aP1 P:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1k8aQ1 Q:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1k8aQ2 Q:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1k8aR1 R:1-95 SH3 SH3 SH3
e1k8aS1 S:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1k8aT1 T:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1k8aU1 U:1-119 SH3 SH3 SH3
e1k8aV1 V:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1k8aW1 W:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1k8aX1 X:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1k8aY1 Y:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1k8aZ1 Z:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e

Structural contacts of domain e1k8aV1 of H-group "LIM domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1k8aL1 V:x,y,z->L:X,Y,Z Ribosomal protein L14-related Interaction Interface Pymol
e1k8aD1 V:x,y,z->D:X,Y,Z RIFT-related Interaction Interface Pymol