ECOD: domain e1kc8E1

Domain ID e1kc8E1

A: a/b three-layered sandwiches
X: Ribosomal protein L4
H: Ribosomal protein L4
T: Ribosomal protein L4
F: Ribosomal_L4

UID:	000109872
Type:	Automatic domain
Parent:	e1vqoC1
Range:	E:1-246
Ligands:	MG NA
PDB:	1kc8
PDB Description:	RIBOSOMAL PROTEIN L4
UniProt:	P12735
Hsap BLAST neighbor:	P36578
Species:	Haloarcula marismortui

Domains in the same chain:

Download Pymol

e1kc8E1	E:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4

Domains in the same PDB:

e1kc811	1:10-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1kc821	2:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1kc831	3:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e1kc841	4:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1kc8C1	C:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1kc8C2	C:91-237	SH3	SH3	SH3
e1kc8D1	D:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e1kc8E1	E:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1kc8F1	F:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1kc8G1	G:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1kc8G2	G:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1kc8H1	H:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1kc8I1	I:12-29,I:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e1kc8J1	J:1-167	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e1kc8K1	K:9-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1kc8L1	L:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1kc8M1	M:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1kc8N1	N:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1kc8O1	O:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1kc8P1	P:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1kc8Q1	Q:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e1kc8Q2	Q:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e1kc8R1	R:1-95	SH3	SH3	SH3
e1kc8S1	S:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1kc8T1	T:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1kc8U1	U:1-119	SH3	SH3	SH3
e1kc8V1	V:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1kc8W1	W:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1kc8X1	X:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1kc8Y1	Y:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e1kc8Z1	Z:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e

Structural contacts of domain e1kc8E1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1kc8P1	E:X,Y,Z->P:x,y,z	Ribosomal proteins L15p and L18e	Interaction Interface Pymol
e1kc821	E:X,Y,Z->2:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1kc8U1	E:X,Y,Z->U:x,y,z	SH3	Interaction Interface Pymol