Domain ID e1kc8E1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109872
Type: Automatic domain
Parent: e1vqoC1
Range: E:1-246
Ligands: MG NA
PDB: 1kc8
PDB Description: RIBOSOMAL PROTEIN L4
UniProt: P12735
Hsap BLAST neighbor: P36578
Species: Haloarcula marismortui

Structure of domain e1kc8E1

Domains in the same chain:

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e1kc8E1 E:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e1kc811 1:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1kc821 2:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1kc831 3:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1kc841 4:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1kc8C1 C:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1kc8C2 C:91-237 SH3 SH3 SH3
e1kc8D1 D:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1kc8E1 E:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1kc8F1 F:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1kc8G1 G:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1kc8G2 G:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1kc8H1 H:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1kc8I1 I:12-29,I:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1kc8J1 J:1-167 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1kc8K1 K:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1kc8L1 L:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1kc8M1 M:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1kc8N1 N:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1kc8O1 O:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1kc8P1 P:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1kc8Q1 Q:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1kc8Q2 Q:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1kc8R1 R:1-95 SH3 SH3 SH3
e1kc8S1 S:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1kc8T1 T:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1kc8U1 U:1-119 SH3 SH3 SH3
e1kc8V1 V:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1kc8W1 W:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1kc8X1 X:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1kc8Y1 Y:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1kc8Z1 Z:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e

Structural contacts of domain e1kc8E1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1kc8P1 E:X,Y,Z->P:x,y,z Ribosomal proteins L15p and L18e Interaction Interface Pymol
e1kc821 E:X,Y,Z->2:x,y,z Rubredoxin-related Interaction Interface Pymol
e1kc8U1 E:X,Y,Z->U:x,y,z SH3 Interaction Interface Pymol