ECOD: domain e1kdhA3

Domain ID e1kdhA3

A: a+b three layers
X: Nucleotidyltransferase-like
H: Nucleotidyltransferase
T: Nucleotidyltransferase
F: NTP_transf_2,DNA_pol_B_thumb

UID:	000078135
Type:	Automatic domain
Parent:	e1jmsA3
Range:	A:303-510
Ligands:	MG
PDB:	1kdh
PDB Description:	Terminal deoxynucleotidyltransferase short isoform
UniProt:	P09838
Hsap BLAST neighbor:	P04053
Species:	Mus musculus

Domains in the same chain:

Download Pymol

e1kdhA2	A:148-242	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1kdhA1	A:243-302	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1kdhA3	A:303-510	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Domains in the same PDB:

e1kdhA2	A:148-242	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1kdhA1	A:243-302	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1kdhA3	A:303-510	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Structural contacts of domain e1kdhA3 of H-group "Nucleotidyltransferase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1kdhA1	A:x,y,z->A:-X+2,Y-1/2,-Z+3/2	SAM/DNA-glycosylase	Interaction Interface Pymol
e1kdhA3	A:x,y,z->A:X-1,Y,Z	Nucleotidyltransferase	Interaction Interface Pymol
e1kdhA2	A:x,y,z->A:X-1,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1kdhA3	A:X-1,Y,Z->A:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol
e1kdhA1	A:x,y,z->A:-X+1,Y-1/2,-Z+3/2	SAM/DNA-glycosylase	Interaction Interface Pymol
e1kdhA3	A:x,y,z->A:-X+3/2,-Y+1,Z-1/2	Nucleotidyltransferase	Interaction Interface Pymol
e1kdhA2	A:-X+3/2,-Y+1,Z-1/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1kdhA3	A:-X+3/2,-Y+1,Z-1/2->A:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol
e1kdhA2	A:-X+5/2,-Y+1,Z-1/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol