ECOD: domain e1kfdA8

Domain ID e1kfdA8

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_A

UID:	001157113
Type:	Automatic domain
Parent:	e2hhvA3
Range:	A:840-928
Ligands:	CTP
PDB:	1kfd
PDB Description:	DNA POLYMERASE I KLENOW FRAGMENT
UniProt:	P00582
Hsap BLAST neighbor:	Q7Z5Q5
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1kfdA8

Domains in the same chain:

Download Pymol

e1kfdA5	A:324-519	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1kfdA7	A:520-574,A:620-701	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1kfdA6	A:702-844	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1kfdA8	A:840-928	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like

Domains in the same PDB:

e1kfdA5	A:324-519	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1kfdA7	A:520-574,A:620-701	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1kfdA6	A:702-844	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1kfdA8	A:840-928	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like

Structural contacts of domain e1kfdA8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1kfdA7	A:x,y,z->A:-X+1,-Y,Z-1/2	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1kfdA5	A:-Y+1,X,Z-1/4->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol