Domain ID e1lv5B3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 000066080
Type: Automatic domain
Parent: e2hhvA3
Range: B:643-667,B:792-875
Ligands: DCP MN
PDB: 1lv5
PDB Description: DNA POLYMERASE I
UniProt: P52026
Hsap BLAST neighbor: O75417
Species: Geobacillus stearothermophilus

Structure of domain e1lv5B3

Domains in the same chain:

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e1lv5B4 B:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1lv5B2 B:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1lv5B3 B:643-667,B:792-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1lv5B1 B:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1lv5A4 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1lv5A2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1lv5A3 A:643-667,A:792-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1lv5A1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1lv5B4 B:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1lv5B2 B:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1lv5B3 B:643-667,B:792-875 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1lv5B1 B:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e1lv5B3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1lv5A1 B:x,y,z->A:-Y+1,X-Y+1,Z+1/3 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e1lv5A4 B:x,y,z->A:-Y+1,X-Y+1,Z+1/3 Ribonuclease H-like Interaction Interface Pymol