Domain ID e1m1yP1

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: Fer4_NifH
UID: 000102009
Type: Automatic domain
Parent: e2afhE1
Range: P:1-289
Ligands: SF4
PDB: 1m1y
PDB Description: nitrogenase IRON protein 1
UniProt: P00459
Species: Azotobacter vinelandii

Structure of domain e1m1yP1

Domains in the same chain:

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e1m1yP1 P:1-289 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e1m1yA2 A:4-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yA1 A:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yA3 A:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yB2 B:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yB1 B:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yB3 B:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yC2 C:4-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yC1 C:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yC3 C:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yD1 D:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yD3 D:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yD2 D:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yE1 E:1-286 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yF1 F:1-289 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yG1 G:1-286 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yH1 H:1-289 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yI3 I:4-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yI2 I:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yI1 I:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yJ2 J:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yJ3 J:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yJ1 J:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yK2 K:4-210 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yK3 K:211-331 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yK1 K:332-480 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yL2 L:2-213 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yL1 L:214-349 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yL3 L:350-523 Flavodoxin-like Class I glutamine amidotransferase-like Chelatase-like
e1m1yM1 M:1-286 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yN1 N:1-289 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yO1 O:1-286 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m1yP1 P:1-289 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e1m1yP1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1m1yO1 P:x,y,z->O:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1m1yO1 P:x,y,z->B:X-1/2,-Y+3/2,-Z+1 P-loop domains-related Interaction Interface Pymol
e1m1yO1 P:x,y,z->L:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1m1yO1 P:x,y,z->K:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1m1yO1 P:x,y,z->A:X-1/2,-Y+3/2,-Z+1 P-loop domains-related Interaction Interface Pymol
e1m1yO1 P:x,y,z->K:X-1,Y,Z P-loop domains-related Interaction Interface Pymol