Domain ID e1m2oA5

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: zf-Sec23_Sec24
UID: 001527408
Type: Automatic domain
Parent: e2qtvA4
Range: A:45-119
Ligands: ZN
PDB: 1m2o
PDB Description: protein transport protein SEC23
UniProt: P15303
Hsap BLAST neighbor: Q15437
Species: Saccharomyces cerevisiae

Structure of domain e1m2oA5

Domains in the same chain:

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e1m2oA2 A:2-44,A:391-523 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e1m2oA5 A:45-119 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1m2oA4 A:120-390 HAD domain-like HAD domain-related vWA-like
e1m2oA3 A:524-626 ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24
e1m2oA1 A:627-765 Gelsolin-like Gelsolin-like Gelsolin-like

Domains in the same PDB:

e1m2oA2 A:2-44,A:391-523 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e1m2oA5 A:45-119 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1m2oA4 A:120-390 HAD domain-like HAD domain-related vWA-like
e1m2oA3 A:524-626 ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24
e1m2oA1 A:627-765 Gelsolin-like Gelsolin-like Gelsolin-like
e1m2oB1 B:24-190 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1m2oC4 C:2-44,C:391-523 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e1m2oC3 C:45-119 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1m2oC1 C:120-390 HAD domain-like HAD domain-related vWA-like
e1m2oC2 C:524-626 ERP29 C domain-like Helical domain of Sec23/24 Helical domain of Sec23/24
e1m2oC5 C:627-765 Gelsolin-like Gelsolin-like Gelsolin-like
e1m2oD1 D:24-188 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e1m2oA5 of H-group "Rubredoxin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1m2oC5 A:-X,Y-1/2,-Z+1/2->C:x,y,z Gelsolin-like Interaction Interface Pymol
e1m2oA2 A:X-1,Y,Z->A:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1m2oC4 A:x,y,z->C:-X+1/2,-Y,Z-1/2 Immunoglobulin-related Interaction Interface Pymol