| UID: | 000003323 |
|---|---|
| Type: | Manual and representative domain |
| Range: | B:107-238 |
| Ligands: | CA F3S HEM SF4 UQ2 |
| PDB: | 1nek |
| PDB Description: | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| UniProt: | P07014 |
| Hsap BLAST neighbor: | P21912 |
| Species: | Escherichia coli |
Structure of domain e1nekB1
Domains in the same chain:
| e1nekB2 | B:1-106 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e1nekB1 | B:107-238 | alpha-helical ferredoxin-like | alpha-helical ferredoxin | alpha-helical ferredoxin |
Domains in the same PDB:
Structural contacts of domain e1nekB1 of H-group "alpha-helical ferredoxin":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1nekA3 | B:x,y,z->A:X,Y,Z | Rossmann-related | Interaction Interface Pymol |
| e1nekC1 | B:X,Y,Z->C:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1nekD1 | B:X,Y,Z->D:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1nekD1 | B:-Y+2,X-Y+1,Z->D:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1nekA3 | B:-Y+2,X-Y+1,Z->A:x,y,z | Rossmann-related | Interaction Interface Pymol |
| e1nekC1 | B:-Y+2,X-Y+1,Z->C:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1nekB1 | B:x,y,z->B:-Y+2,X-Y+1,Z | alpha-helical ferredoxin | Interaction Interface Pymol |
| e1nekB1 | B:-Y+2,X-Y+1,Z->B:x,y,z | alpha-helical ferredoxin | Interaction Interface Pymol |
