Domain ID e1njiE1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109903
Type: Automatic domain
Parent: e1vqoC1
Range: E:1-246
Ligands: MG NA
PDB: 1nji
PDB Description: 50S RIBOSOMAL PROTEIN L4E
UniProt: P12735
Hsap BLAST neighbor: P36578
Species: Haloarcula marismortui

Structure of domain e1njiE1

Domains in the same chain:

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e1njiE1 E:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e1nji11 1:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1nji21 2:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1nji31 3:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1nji41 4:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1njiC1 C:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1njiC2 C:91-237 SH3 SH3 SH3
e1njiD1 D:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1njiE1 E:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1njiF1 F:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1njiG1 G:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1njiG2 G:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1njiH1 H:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1njiI1 I:12-29,I:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1njiJ1 J:1-167 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1njiK1 K:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1njiL1 L:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1njiM1 M:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1njiN1 N:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1njiO1 O:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1njiP1 P:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1njiQ1 Q:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1njiQ2 Q:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1njiR1 R:1-95 SH3 SH3 SH3
e1njiS1 S:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1njiT1 T:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1njiU1 U:1-119 SH3 SH3 SH3
e1njiV1 V:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1njiW1 W:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1njiX1 X:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1njiY1 Y:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1njiZ1 Z:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e

Structural contacts of domain e1njiE1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1njiP1 E:X,Y,Z->P:x,y,z Ribosomal proteins L15p and L18e Interaction Interface Pymol
e1nji21 E:X,Y,Z->2:x,y,z Rubredoxin-related Interaction Interface Pymol
e1njiU1 E:X,Y,Z->U:x,y,z SH3 Interaction Interface Pymol