ECOD: domain e1nkgA1

Domain ID e1nkgA1

A: beta sandwiches
X: jelly-roll
H: Galactose-binding domain-like
T: Galactose-binding domain-like
F: CBM-like

UID:	000001167
Type:	Manual and representative domain
Range:	A:338-508
Ligands:	CA SO4
PDB:	1nkg
PDB Description:	Rhamnogalacturonase B
UniProt:	Q00019
Species:	Aspergillus aculeatus

Domains in the same chain:

Download Pymol

e1nkgA3	A:1-250	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1nkgA2	A:251-337	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e1nkgA1	A:338-508	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Domains in the same PDB:

e1nkgA3	A:1-250	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1nkgA2	A:251-337	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e1nkgA1	A:338-508	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Structural contacts of domain e1nkgA1 of H-group "Galactose-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1nkgA3	A:X-1/2,-Y+1/2,-Z+1/4->A:x,y,z	supersandwich	Interaction Interface Pymol
e1nkgA1	A:x,y,z->A:-Y+1,-X+1,-Z+1/2	Galactose-binding domain-like	Interaction Interface Pymol
e1nkgA1	A:-Y+1,-X+1,-Z+1/2->A:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol
e1nkgA3	A:X,Y-1,Z->A:x,y,z	supersandwich	Interaction Interface Pymol