ECOD: domain e1nkgA3

Domain ID e1nkgA3

A: beta sandwiches
X: Glycosyl hydrolase domain-like
H: supersandwich
T: supersandwich
F: RhgB_N

UID:	000002027
Type:	Manual and representative domain
Range:	A:1-250
Ligands:	SO4
PDB:	1nkg
PDB Description:	Rhamnogalacturonase B
UniProt:	Q00019
Species:	Aspergillus aculeatus

Domains in the same chain:

Download Pymol

e1nkgA3	A:1-250	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1nkgA2	A:251-337	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e1nkgA1	A:338-508	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Domains in the same PDB:

e1nkgA3	A:1-250	Glycosyl hydrolase domain-like	supersandwich	supersandwich
e1nkgA2	A:251-337	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Prealbumin-like
e1nkgA1	A:338-508	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Structural contacts of domain e1nkgA3 of H-group "supersandwich":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1nkgA2	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/4	Immunoglobulin-related	Interaction Interface Pymol
e1nkgA3	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/4	supersandwich	Interaction Interface Pymol
e1nkgA1	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/4	Galactose-binding domain-like	Interaction Interface Pymol
e1nkgA3	A:X-1/2,-Y+1/2,-Z+1/4->A:x,y,z	supersandwich	Interaction Interface Pymol
e1nkgA2	A:-Y+1/2,X+1/2,Z-1/4->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1nkgA1	A:x,y,z->A:X,Y-1,Z	Galactose-binding domain-like	Interaction Interface Pymol