| UID: | 000031321 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1alyA1 |
| Range: | D:1-144 |
| PDB: | 1oqd |
| PDB Description: | TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 13B, SOLUBLE FORM |
| UniProt: | Q9Y275 |
| Hsap BLAST neighbor: | Q9Y275 |
| Species: | Homo sapiens |
Structure of domain e1oqdD1
Domains in the same chain:
| e1oqdD1 | D:1-144 | jelly-roll | TNF-like | TNF-like |
Domains in the same PDB:
| e1oqdA1 | A:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdB1 | B:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdC1 | C:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdD1 | D:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdE1 | E:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdF1 | F:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdG1 | G:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdH1 | H:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdI1 | I:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdJ1 | J:1-144 | jelly-roll | TNF-like | TNF-like |
| e1oqdK1 | K:1-36 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdL1 | L:1-36 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdM1 | M:1-36 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdN1 | N:1-21 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdO1 | O:1-36 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdP1 | P:1-36 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdQ1 | Q:1-36 | EGF-like | EGF-related | TNF receptor-like |
| e1oqdR1 | R:1-36 | EGF-like | EGF-related | TNF receptor-like |
Structural contacts of domain e1oqdD1 of H-group "TNF-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1oqdE1 | D:X,Y,Z->E:x,y,z | TNF-like | Interaction Interface Pymol |
| e1oqdF1 | D:X,Y,Z->F:x,y,z | TNF-like | Interaction Interface Pymol |
| e1oqdH1 | D:x,y,z->H:-Y+1,X-Y+1,Z | TNF-like | Interaction Interface Pymol |
| e1oqdB1 | D:x,y,z->B:X,Y,Z | TNF-like | Interaction Interface Pymol |
| e1oqdI1 | D:x,y,z->I:-Y+1,X-Y+1,Z | TNF-like | Interaction Interface Pymol |
| e1oqdO1 | D:X,Y,Z->O:x,y,z | EGF-related | Interaction Interface Pymol |
| e1oqdD1 | D:x,y,z->D:Y,X,-Z | TNF-like | Interaction Interface Pymol |
| e1oqdD1 | D:Y,X,-Z->D:x,y,z | TNF-like | Interaction Interface Pymol |
