ECOD: domain e1pd1A5

Domain ID e1pd1A5

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: zf-Sec23_Sec24

UID:	001394613
Type:	Automatic domain
Parent:	e1pd0A4
Range:	A:216-300
Ligands:	ZN
PDB:	1pd1
PDB Description:	Protein transport protein Sec24
UniProt:	P40482
Hsap BLAST neighbor:	O95486
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e1pd1A5

Domains in the same chain:

Download Pymol

e1pd1A3	A:133-215,A:553-646	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e1pd1A5	A:216-300	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1pd1A2	A:301-459,A:480-552	HAD domain-like	HAD domain-related	vWA-like
e1pd1A4	A:647-753	ERP29 C domain-like	Helical domain of Sec23/24	Helical domain of Sec23/24
e1pd1A1	A:754-926	Gelsolin-like	Gelsolin-like	Gelsolin-like

Domains in the same PDB:

e1pd1A3	A:133-215,A:553-646	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e1pd1A5	A:216-300	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1pd1A2	A:301-459,A:480-552	HAD domain-like	HAD domain-related	vWA-like
e1pd1A4	A:647-753	ERP29 C domain-like	Helical domain of Sec23/24	Helical domain of Sec23/24
e1pd1A1	A:754-926	Gelsolin-like	Gelsolin-like	Gelsolin-like

Structural contacts of domain e1pd1A5 of H-group "Rubredoxin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1pd1A2	A:-X+1,-X+Y,-Z+2/3->A:x,y,z	HAD domain-related	Interaction Interface Pymol
e1pd1A1	A:-Y+1,X-Y+1,Z-1/3->A:x,y,z	Gelsolin-like	Interaction Interface Pymol