Domain ID e1q86F1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000067613
Type: Automatic domain
Parent: e1iq4A1
Range: F:10-174
Ligands: CL
PDB: 1q86
PDB Description: 50S ribosomal protein L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e1q86F1

Domains in the same chain:

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e1q86F1 F:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e1q8611 1:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1q8621 2:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1q8631 3:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1q8641 4:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1q86C1 C:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1q86C2 C:91-237 SH3 SH3 SH3
e1q86D1 D:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1q86E1 E:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1q86F1 F:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1q86G1 G:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1q86G2 G:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1q86H1 H:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1q86I1 I:12-29,I:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1q86J1 J:1-167 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1q86K1 K:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1q86L1 L:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1q86M1 M:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1q86N1 N:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1q86O1 O:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q86P1 P:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1q86Q1 Q:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1q86Q2 Q:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1q86R1 R:1-95 SH3 SH3 SH3
e1q86S1 S:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1q86T1 T:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1q86U1 U:1-119 SH3 SH3 SH3
e1q86V1 V:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1q86W1 W:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1q86X1 X:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1q86Y1 Y:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1q86Z1 Z:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e

Structural contacts of domain e1q86F1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1q86O1 F:X,Y,Z->O:x,y,z Ribonuclease H-like Interaction Interface Pymol
e1q86D1 F:x,y,z->D:-X+1/2,Y-1/2,-Z+1/2 RIFT-related Interaction Interface Pymol