| UID: | 001171568 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1dpjA2 |
| Range: | B:6P-245,B:254-338 |
| PDB: | 1qdm |
| PDB Description: | PROPHYTEPSIN |
| UniProt: | P42210 |
| Hsap BLAST neighbor: | P07339 |
| Species: | Hordeum vulgare |
Structure of domain e1qdmB3
Domains in the same chain:
| e1qdmB3 | B:6P-245,B:254-338 | cradle loop barrel | RIFT-related | acid protease |
| e1qdmB4 | B:246-38S,B:65S-253 | Saposin-like | Saposin-like | Saposin-like |
Domains in the same PDB:
| e1qdmA2 | A:1S-38S,A:65S-104S | Saposin-like | Saposin-like | Saposin-like |
| e1qdmA3 | A:6P-245,A:254-338 | cradle loop barrel | RIFT-related | acid protease |
| e1qdmB3 | B:6P-245,B:254-338 | cradle loop barrel | RIFT-related | acid protease |
| e1qdmB4 | B:246-38S,B:65S-253 | Saposin-like | Saposin-like | Saposin-like |
| e1qdmC3 | C:6P-245,C:254-338 | cradle loop barrel | RIFT-related | acid protease |
| e1qdmC4 | C:246-38S,C:65S-253 | Saposin-like | Saposin-like | Saposin-like |
Structural contacts of domain e1qdmB3 of H-group "RIFT-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1qdmA3 | B:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e1qdmC3 | B:x,y,z->C:-X+1,Y-1/2,-Z | RIFT-related | Interaction Interface Pymol |
| e1qdmA3 | B:x,y,z->A:X-1,Y,Z-1 | RIFT-related | Interaction Interface Pymol |
| e1qdmA3 | B:x,y,z->A:X,Y,Z-1 | RIFT-related | Interaction Interface Pymol |
| e1qdmC3 | B:x,y,z->C:X-1,Y,Z-1 | RIFT-related | Interaction Interface Pymol |
| e1qdmA3 | B:x,y,z->A:X-1,Y,Z | RIFT-related | Interaction Interface Pymol |
