ECOD: domain e1qdmC3

Domain ID e1qdmC3

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: acid protease
F: Asp

UID:	001171466
Type:	Automatic domain
Parent:	e1dpjA2
Range:	C:6P-245,C:254-338
PDB:	1qdm
PDB Description:	PROPHYTEPSIN
UniProt:	P42210
Hsap BLAST neighbor:	P07339
Species:	Hordeum vulgare

Domains in the same chain:

Download Pymol

e1qdmC3	C:6P-245,C:254-338	cradle loop barrel	RIFT-related	acid protease
e1qdmC4	C:246-38S,C:65S-253	Saposin-like	Saposin-like	Saposin-like

Domains in the same PDB:

e1qdmA2	A:1S-38S,A:65S-104S	Saposin-like	Saposin-like	Saposin-like
e1qdmA3	A:6P-245,A:254-338	cradle loop barrel	RIFT-related	acid protease
e1qdmB3	B:6P-245,B:254-338	cradle loop barrel	RIFT-related	acid protease
e1qdmB4	B:246-38S,B:65S-253	Saposin-like	Saposin-like	Saposin-like
e1qdmC3	C:6P-245,C:254-338	cradle loop barrel	RIFT-related	acid protease
e1qdmC4	C:246-38S,C:65S-253	Saposin-like	Saposin-like	Saposin-like

Structural contacts of domain e1qdmC3 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1qdmA3	C:-X+1,Y-1/2,-Z->A:x,y,z	RIFT-related	Interaction Interface Pymol
e1qdmB3	C:-X+1,Y-1/2,-Z->B:x,y,z	RIFT-related	Interaction Interface Pymol
e1qdmA3	C:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e1qdmA3	C:-X+1,Y-1/2,-Z+1->A:x,y,z	RIFT-related	Interaction Interface Pymol
e1qdmB3	C:X-1,Y,Z-1->B:x,y,z	RIFT-related	Interaction Interface Pymol
e1qdmC3	C:x,y,z->C:X-1,Y,Z	RIFT-related	Interaction Interface Pymol
e1qdmC3	C:X-1,Y,Z->C:x,y,z	RIFT-related	Interaction Interface Pymol