Domain ID e1qqcA6

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 000115827
Type: Automatic domain
Parent: e1tgoA6
Range: A:133-346
Ligands: MG SO4
PDB: 1qqc
PDB Description: DNA POLYMERASE II
UniProt: Q7SIG7
Hsap BLAST neighbor: P28340
Species: Desulfurococcus sp. Tok

Structure of domain e1qqcA6

Domains in the same chain:

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e1qqcA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1qqcA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1qqcA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1qqcA4 A:348-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1qqcA2 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1qqcA3 A:610-756 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1qqcA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1qqcA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1qqcA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1qqcA4 A:348-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1qqcA2 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1qqcA3 A:610-756 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1qqcA6 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1qqcA5 A:-X+1,Y-1/2,-Z+1/2->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol
e1qqcA4 A:-X+1,Y-1/2,-Z+1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1qqcA3 A:x,y,z->A:X-1/2,-Y+3/2,-Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol