Domain ID e1tgoA6

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 000011240
Type: Manual and representative domain
Range: A:134-347
PDB: 1tgo
PDB Description: PROTEIN (THERMOSTABLE B DNA POLYMERASE)
UniProt: P56689
Hsap BLAST neighbor: P28340
Species: Thermococcus gorgonarius

Structure of domain e1tgoA6

Domains in the same chain:

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e1tgoA1 A:1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1tgoA5 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1tgoA6 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1tgoA4 A:348-447,A:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1tgoA2 A:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1tgoA3 A:611-773 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1tgoA1 A:1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1tgoA5 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1tgoA6 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1tgoA4 A:348-447,A:502-610 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1tgoA2 A:448-501 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1tgoA3 A:611-773 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1tgoA6 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1tgoA4 A:X-1/2,-Y+1/2,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1tgoA5 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Family B DNA polymerase insertion domain Interaction Interface Pymol
e1tgoA4 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1tgoA3 A:X-1/2,-Y-1/2,-Z->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol