Domain ID e1qvgY1

Download files:
  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L37ae
UID: 000088783
Type: Automatic domain
Parent: e1vqoZ1
Range: Y:10-82
Ligands: CD MG
PDB: 1qvg
PDB Description: L37Ae 50S ribosomal protein
UniProt: P60619
Hsap BLAST neighbor: P61513
Species: Haloarcula marismortui

Structure of domain e1qvgY1

Domains in the same chain:

Download Pymol

e1qvgY1 Y:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e1qvg11 1:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1qvg21 2:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1qvgA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1qvgA2 A:91-237 SH3 SH3 SH3
e1qvgB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1qvgC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1qvgD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1qvgE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1qvgE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1qvgF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1qvgG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1qvgH1 H:1-167 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1qvgI1 I:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1qvgJ1 J:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1qvgK1 K:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1qvgL1 L:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1qvgM1 M:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1qvgN1 N:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1qvgO1 O:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1qvgO2 O:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1qvgP1 P:1-95 SH3 SH3 SH3
e1qvgQ1 Q:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1qvgR1 R:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1qvgS1 S:1-119 SH3 SH3 SH3
e1qvgT1 T:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1qvgU1 U:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1qvgV1 V:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1qvgW1 W:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1qvgX1 X:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1qvgY1 Y:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1qvgZ1 Z:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1qvgY1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1qvgA2 Y:x,y,z->A:X,Y,Z SH3 Interaction Interface Pymol
e1qvgA1 Y:x,y,z->A:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol