ECOD: domain e1r0vD2

Domain ID e1r0vD2

A: a/b three-layered sandwiches
X: Restriction endonuclease-like
H: tRNA-intron endonuclease catalytic domain-like
T: tRNA-intron endonuclease catalytic domain-like
F: Unmapped domains

UID:	000114355
Type:	Automatic domain
Parent:	e1r0vA2
Range:	D:63-139
PDB:	1r0v
PDB Description:	tRNA-intron endonuclease
UniProt:	O29362
Species:

Domains in the same chain:

Download Pymol

e1r0vD2	D:63-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vD1	D:140-214	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1r0vD3	D:215-305	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e1r0vA2	A:62-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vA1	A:140-214	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1r0vA3	A:215-305	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vB2	B:62-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vB1	B:140-214	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1r0vB3	B:215-305	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vC2	C:62-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vC1	C:140-214	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1r0vC3	C:215-305	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vD2	D:63-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e1r0vD1	D:140-214	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e1r0vD3	D:215-305	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e1r0vD2 of H-group "tRNA-intron endonuclease catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1r0vC1	D:x,y,z->C:X,Y,Z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e1r0vC3	D:x,y,z->C:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1r0vC2	D:X,Y,Z-1->C:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1r0vC1	D:X,Y,Z-1->C:x,y,z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e1r0vC3	D:X,Y,Z-1->C:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1r0vD3	D:x,y,z->D:-X,-Y+1,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1r0vD3	D:-X,-Y+1,Z->D:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e1r0vA3	D:-X+1/2,Y-1/2,-Z+1->A:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol