Domain ID e1r0vD3

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  • A: a/b three-layered sandwiches
  • X: Restriction endonuclease-like
  • H: tRNA-intron endonuclease catalytic domain-like
  • T: tRNA-intron endonuclease catalytic domain-like
  • F: tRNA_int_endo
UID: 000114363
Type: Automatic domain
Parent: e1a79A2
Range: D:215-305
PDB: 1r0v
PDB Description: tRNA-intron endonuclease
UniProt: O29362
Species:

Structure of domain e1r0vD3

Domains in the same chain:

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e1r0vD2 D:63-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vD1 D:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1r0vD3 D:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e1r0vA2 A:62-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vA1 A:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1r0vA3 A:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vB2 B:62-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vB1 B:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1r0vB3 B:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vC2 C:62-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vC1 C:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1r0vC3 C:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vD2 D:63-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1r0vD1 D:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1r0vD3 D:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e1r0vD3 of H-group "tRNA-intron endonuclease catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1r0vC2 D:x,y,z->C:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vC3 D:x,y,z->C:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vC2 D:X,Y,Z-1->C:x,y,z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vD3 D:x,y,z->D:-X,-Y+1,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vD2 D:x,y,z->D:-X,-Y+1,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vD2 D:-X,-Y+1,Z->D:x,y,z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vD3 D:-X,-Y+1,Z->D:x,y,z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1r0vA1 D:-X+1/2,Y-1/2,-Z+1->A:x,y,z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol
e1r0vA3 D:-X+1/2,Y-1/2,-Z+1->A:x,y,z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol