Domain ID e1rq0B1

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  • A: alpha bundles
  • X: Release factor (Pfam 00472) N-terminal alpha helical domain
  • H: Release factor (Pfam 00472) N-terminal alpha helical domain
  • T: Release factor (Pfam 00472) N-terminal alpha helical domain
  • F: Unmapped domains
UID: 000053753
Type: Automatic domain
Parent: e1rq0A1
Range: B:401-481
PDB: 1rq0
PDB Description: Peptide chain release factor 1
UniProt: Q9X183
Species: Thermotoga maritima

Structure of domain e1rq0B1

Domains in the same chain:

e1rq0B1 B:401-481 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0B2 B:482-584 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0B3 B:585-667 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0B4 B:668,B:679-732 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Domains in the same PDB:

e1rq0A1 A:1-82 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0A2 A:83-185 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0A3 A:186-268 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0A4 A:279-333 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0B1 B:401-481 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0B2 B:482-584 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0B3 B:585-667 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0B4 B:668,B:679-732 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0C1 C:801-881 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0C2 C:882-984 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0C3 C:985-1067 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0C4 C:1068,C:1079-1132 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e1rq0B1 of H-group "Release factor (Pfam 00472) N-terminal alpha helical domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1rq0A4 B:x,y,z->A:-X+1,Y-1/2,-Z+1 Peptidyl-tRNA hydrolase domain-like Interaction Interface Pymol
e1rq0A3 B:x,y,z->A:-X+1,Y-1/2,-Z+1 Peptidyl-tRNA hydrolase domain-like Interaction Interface Pymol
e1rq0C1 B:X,Y,Z-1->C:x,y,z Release factor (Pfam 00472) N-terminal alpha helical domain Interaction Interface Pymol
e1rq0C3 B:x,y,z->C:X-1,Y,Z+1 Peptidyl-tRNA hydrolase domain-like Interaction Interface Pymol
e1rq0C1 B:x,y,z->C:-X,Y-1/2,-Z Release factor (Pfam 00472) N-terminal alpha helical domain Interaction Interface Pymol