Domain ID e1rq0B3

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  • A: a+b two layers
  • X: dsRBD-like
  • H: Peptidyl-tRNA hydrolase domain-like
  • T: Peptidyl-tRNA hydrolase domain-like
  • F: RF-1
UID: 000070099
Type: Automatic domain
Parent: e1gqeA3
Range: B:585-667
PDB: 1rq0
PDB Description: Peptide chain release factor 1
UniProt: Q9X183
Hsap BLAST neighbor: O75570
Species: Thermotoga maritima

Structure of domain e1rq0B3

Domains in the same chain:

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e1rq0B1 B:401-481 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0B2 B:482-584 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0B3 B:585-667 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0B4 B:668,B:679-732 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Domains in the same PDB:

e1rq0A1 A:1-82 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0A2 A:83-185 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0A3 A:186-268 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0A4 A:279-333 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0B1 B:401-481 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0B2 B:482-584 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0B3 B:585-667 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0B4 B:668,B:679-732 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0C1 C:801-881 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e1rq0C2 C:882-984 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e1rq0C3 C:985-1067 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e1rq0C4 C:1068,C:1079-1132 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e1rq0B3 of H-group "Peptidyl-tRNA hydrolase domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1rq0A4 B:x,y,z->A:X,Y,Z Peptidyl-tRNA hydrolase domain-like Interaction Interface Pymol
e1rq0A2 B:x,y,z->A:X,Y,Z Ferredoxin-like domain in release factor Interaction Interface Pymol