Domain ID e1s4fD2

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: RdRP_3
UID: 000066451
Type: Automatic domain
Parent: e1s48A2
Range: D:92-488
PDB: 1s4f
PDB Description: RNA-DEPENDENT RNA POLYMERASE
UniProt: P19711
Species: Bovine viral diarrhea virus 1

Structure of domain e1s4fD2

Domains in the same chain:

e1s4fD2 D:92-488 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s4fD1 D:489-675 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e1s4fA2 A:92-488 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s4fA1 A:489-674 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1s4fB2 B:92-488 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s4fB1 B:489-674 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1s4fC2 C:92-488 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s4fC1 C:489-674 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1s4fD2 D:92-488 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s4fD1 D:489-675 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e1s4fD2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s4fC2 D:x,y,z->C:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s4fD1 D:x,y,z->D:-X+Y,Y,-Z+1 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1s4fD1 D:-X+Y,Y,-Z+1->D:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1s4fA1 D:x,y,z->A:X,Y,Z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1s4fB2 D:x,y,z->B:-X,-X+Y,-Z+4/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol