Domain ID e1s5jA3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 000005356
Type: Manual and representative domain
Range: A:450-561,A:618-718
Ligands: SO4
PDB: 1s5j
PDB Description: DNA POLYMERASE I
UniProt: P26811
Species: Sulfolobus solfataricus

Structure of domain e1s5jA3

Domains in the same chain:

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e1s5jA5 A:40-84,A:157-203 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1s5jA6 A:85-156 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1s5jA7 A:204-449 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1s5jA3 A:450-561,A:618-718 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s5jA1 A:562-617 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1s5jA2 A:727-766,A:837-864 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1s5jA5 A:40-84,A:157-203 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1s5jA6 A:85-156 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1s5jA7 A:204-449 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1s5jA3 A:450-561,A:618-718 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s5jA1 A:562-617 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1s5jA2 A:727-766,A:837-864 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1s5jA3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s5jA3 A:x,y,z->A:-X+1,Y,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s5jA2 A:x,y,z->A:-X+1,Y,-Z+1 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e1s5jA3 A:-X+1,Y,-Z+1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s5jA2 A:-X+1,Y,-Z+1->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e1s5jA7 A:x,y,z->A:-X+1/2,Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol