ECOD: domain e1s5jA5

Domain ID e1s5jA5

A: beta barrels
X: OB-fold
H: Nucleic acid-binding proteins
T: Nucleic acid-binding proteins
F: Unmapped domains

UID:	000223688
Type:	Manual and representative domain
Range:	A:40-84,A:157-203
Ligands:	SO4
PDB:	1s5j
PDB Description:	DNA POLYMERASE I
UniProt:	P26811
Species:	Sulfolobus solfataricus

Domains in the same chain:

Download Pymol

e1s5jA5	A:40-84,A:157-203	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1s5jA6	A:85-156	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e1s5jA7	A:204-449	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1s5jA3	A:450-561,A:618-718	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1s5jA1	A:562-617	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1s5jA2	A:727-766,A:837-864	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1s5jA5	A:40-84,A:157-203	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1s5jA6	A:85-156	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e1s5jA7	A:204-449	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1s5jA3	A:450-561,A:618-718	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1s5jA1	A:562-617	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1s5jA2	A:727-766,A:837-864	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1s5jA5 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1s5jA6	A:x,y,z->A:-X+1/2,Y-1/2,-Z	Family B DNA polymerase insertion domain	Interaction Interface Pymol