ECOD: domain e1sksA3

Domain ID e1sksA3

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_A

UID:	000066108
Type:	Automatic domain
Parent:	e2hhvA3
Range:	A:463-490,A:614-703
PDB:	1sks
PDB Description:	DNA polymerase
UniProt:	P00581
Species:	Enterobacteria phage T7

Domain
In chain context
In PDB context

Structure of domain e1sksA3

Domains in the same chain:

Download Pymol

e1sksA4	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1sksA2	A:211-462	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1sksA3	A:463-490,A:614-703	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1sksA1	A:491-613	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1sksA4	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1sksA2	A:211-462	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1sksA3	A:463-490,A:614-703	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1sksA1	A:491-613	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1sksB1	B:3-107	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like

Structural contacts of domain e1sksA3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1sksA4	A:x,y,z->A:X,Y,Z-1	Ribonuclease H-like	Interaction Interface Pymol
e1sksA1	A:x,y,z->A:X,Y,Z-1	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e1sksA4	A:x,y,z->A:-X+1,-Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e1sksA4	A:-X+1,-Y,Z->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol