ECOD: domain e1sqxD1

Domain ID e1sqxD1

A: alpha arrays
X: Cytochrome c-like
H: Cytochrome c
T: Cytochrome c
F: Cytochrom_C1

UID:	000051677
Type:	Automatic domain
Parent:	e1ppjD1
Range:	D:1-195
Ligands:	HEM
PDB:	1sqx
PDB Description:	Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) [Contains: Ubiquinol-cytochrome c reductase 8 kDa protein (Complex III subunit IX)]
UniProt:	P00125
Hsap BLAST neighbor:	P08574
Species:	Bos taurus

Domains in the same chain:

Download Pymol

e1sqxD1	D:1-195	Cytochrome c-like	Cytochrome c	Cytochrome c
e1sqxD2	D:196-241	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor

Domains in the same PDB:

Structural contacts of domain e1sqxD1 of H-group "Cytochrome c":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1sqxC2	D:x,y,z->C:X,Y,Z	Transmembrane heme-binding four-helical bundle	Interaction Interface Pymol
e1sqxC1	D:x,y,z->C:X,Y,Z	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol
e1sqxH1	D:X,Y,Z->H:x,y,z	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol
e1sqxJ1	D:X,Y,Z->J:x,y,z	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol
e1sqxE2	D:x,y,z->E:X,Y,Z	iron-sulfur subunit (ISP) transmembrane anchor	Interaction Interface Pymol
e1sqxE2	D:x,y,z->E:X,Y,Z	iron-sulfur subunit (ISP) transmembrane anchor	Interaction Interface Pymol
e1sqxG1	D:X,Y,Z->G:x,y,z	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol
e1sqxD1	D:x,y,z->D:-X+1,-Y+1,Z	Cytochrome c	Interaction Interface Pymol
e1sqxD1	D:-X+1,-Y+1,Z->D:x,y,z	Cytochrome c	Interaction Interface Pymol

e1sqxA1	A:2-233	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1sqxA2	A:234-442	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1sqxB1	B:18-235	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1sqxB2	B:236-439	LuxS, MPP, ThrRS/AlaRS common domain	LuxS, MPP, ThrRS/AlaRS common domain	LuxS/MPP-like metallohydrolase
e1sqxC2	C:15-260	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e1sqxC1	C:261-379	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqxD1	D:1-195	Cytochrome c-like	Cytochrome c	Cytochrome c
e1sqxD2	D:196-241	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor	cytochrome c1 transmembrane anchor
e1sqxE2	E:1-69	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e1sqxE3	E:70-196	ISP domain	ISP domain	ISP domain
e1sqxF1	F:12-110	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqxG1	G:1-75	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqxH1	H:13-78	cytochrome bc1 complex 11 kDa protein-like	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqxI1	I:1-57	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein	Ubiquinol-cytochrome c reductase 8 kDa protein
e1sqxJ1	J:2-61	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqxK1	K:1-53	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)