Domain ID e1sxjE6

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DNA_pol3_delta2
UID: 001002411
Type: Manual and representative domain
Range: E:4-192
Ligands: ADP AGS MG
PDB: 1sxj
PDB Description: Activator 1 40 kDa subunit
UniProt: P38251
Hsap BLAST neighbor: P40938
Species: Saccharomyces cerevisiae

Structure of domain e1sxjE6

Domains in the same chain:

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e1sxjE6 E:4-192 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjE5 E:193-255 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjE1 E:256-354 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e1sxjA3 A:295-478 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjA2 A:479-547 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjA1 A:548-693 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjB3 B:7-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjB2 B:166-229 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjB1 B:231-322 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjC5 C:12-167 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjC6 C:168-232 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjC1 C:239-333 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjD4 D:26-192 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjD5 D:193-261 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjD1 D:263-353 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjE6 E:4-192 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjE5 E:193-255 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjE1 E:256-354 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjF1 F:1-126 DNA clamp DNA clamp DNA clamp
e1sxjF2 F:127-256 DNA clamp DNA clamp DNA clamp
e1sxjG1 G:1-126 DNA clamp DNA clamp DNA clamp
e1sxjG2 G:127-255 DNA clamp DNA clamp DNA clamp
e1sxjH1 H:1-126 DNA clamp DNA clamp DNA clamp
e1sxjH2 H:127-254 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e1sxjE6 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1sxjA1 E:x,y,z->A:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e1sxjD1 E:x,y,z->D:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e1sxjD5 E:x,y,z->D:X,Y,Z Histone-related Interaction Interface Pymol
e1sxjD4 E:x,y,z->D:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1sxjC1 E:X-1/2,-Y+1/2,-Z->C:x,y,z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e1sxjC1 E:x,y,z->C:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol