Domain ID e1sxjF2

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  • A: a+b two layers
  • X: DNA clamp
  • H: DNA clamp
  • T: DNA clamp
  • F: PCNA_C
UID: 000071040
Type: Automatic domain
Parent: e1plqA2
Range: F:127-256
PDB: 1sxj
PDB Description: Proliferating cell nuclear antigen
UniProt: P15873
Hsap BLAST neighbor: P12004
Species: Saccharomyces cerevisiae

Structure of domain e1sxjF2

Domains in the same chain:

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e1sxjF1 F:1-126 DNA clamp DNA clamp DNA clamp
e1sxjF2 F:127-256 DNA clamp DNA clamp DNA clamp

Domains in the same PDB:

e1sxjA3 A:295-478 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjA2 A:479-547 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjA1 A:548-693 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjB3 B:7-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjB2 B:166-229 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjB1 B:231-322 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjC5 C:12-167 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjC6 C:168-232 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjC1 C:239-333 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjD4 D:26-192 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjD5 D:193-261 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjD1 D:263-353 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjE6 E:4-192 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1sxjE5 E:193-255 Histone-like Histone-related AAA+ ATPase lid domain
e1sxjE1 E:256-354 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1sxjF1 F:1-126 DNA clamp DNA clamp DNA clamp
e1sxjF2 F:127-256 DNA clamp DNA clamp DNA clamp
e1sxjG1 G:1-126 DNA clamp DNA clamp DNA clamp
e1sxjG2 G:127-255 DNA clamp DNA clamp DNA clamp
e1sxjH1 H:1-126 DNA clamp DNA clamp DNA clamp
e1sxjH2 H:127-254 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e1sxjF2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1sxjC5 F:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1sxjG1 F:X,Y,Z->G:x,y,z DNA clamp Interaction Interface Pymol
e1sxjE1 F:X,Y-1,Z->E:x,y,z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e1sxjE5 F:X,Y-1,Z->E:x,y,z Histone-related Interaction Interface Pymol
e1sxjB3 F:x,y,z->B:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1sxjB3 F:-X,Y-1/2,-Z+1/2->B:x,y,z P-loop domains-related Interaction Interface Pymol
e1sxjA2 F:-X,Y-1/2,-Z+1/2->A:x,y,z Histone-related Interaction Interface Pymol