ECOD: domain e1tgoA3

Domain ID e1tgoA3

A: alpha bundles
X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
F: DNA_pol_B

UID:	000004202
Type:	Manual and representative domain
Range:	A:611-773
PDB:	1tgo
PDB Description:	PROTEIN (THERMOSTABLE B DNA POLYMERASE)
UniProt:	P56689
Hsap BLAST neighbor:	P09884
Species:	Thermococcus gorgonarius

Domains in the same chain:

Download Pymol

e1tgoA1	A:1-34,A:115-133	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1tgoA5	A:35-114	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e1tgoA6	A:134-347	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1tgoA4	A:348-447,A:502-610	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1tgoA2	A:448-501	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1tgoA3	A:611-773	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1tgoA1	A:1-34,A:115-133	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1tgoA5	A:35-114	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e1tgoA6	A:134-347	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1tgoA4	A:348-447,A:502-610	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1tgoA2	A:448-501	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1tgoA3	A:611-773	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1tgoA3 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1tgoA4	A:x,y,z->A:X-1/2,-Y+1/2,-Z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1tgoA2	A:x,y,z->A:X-1/2,-Y+1/2,-Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1tgoA4	A:X-1/2,-Y+1/2,-Z->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e1tgoA5	A:x,y,z->A:-X-1/2,-Y,Z-1/2	Family B DNA polymerase insertion domain	Interaction Interface Pymol
e1tgoA6	A:x,y,z->A:X-1/2,-Y-1/2,-Z	Ribonuclease H-like	Interaction Interface Pymol