Domain ID e1upaD2

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_N
UID: 000110774
Type: Automatic domain
Parent: e1pvdA2
Range: D:12-197
Ligands: SO4 TPP
PDB: 1upa
PDB Description: CARBOXYETHYLARGININE SYNTHASE
UniProt: Q9LCV9
Hsap BLAST neighbor: A1L0T0
Species: Streptomyces clavuligerus

Structure of domain e1upaD2

Domains in the same chain:

e1upaD2 D:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaD1 D:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upaD3 D:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e1upaA2 A:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaA1 A:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upaA3 A:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaB2 B:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaB1 B:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upaB3 B:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaC2 C:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaC1 C:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upaC3 C:375-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaD2 D:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upaD1 D:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upaD3 D:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e1upaD2 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1upaC3 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upaC1 D:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e1upaC2 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upaB1 D:x,y,z->B:X,Y,Z Rossmann-related Interaction Interface Pymol
e1upaB2 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upaA2 D:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol