Domain ID e1upcF2

Download files:
  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_N
UID: 000110789
Type: Automatic domain
Parent: e1pvdA2
Range: F:12-197
Ligands: SO4 TPP
PDB: 1upc
PDB Description: CARBOXYETHYLARGININE SYNTHASE
UniProt: Q9LCV9
Hsap BLAST neighbor: A1L0T0
Species: Streptomyces clavuligerus

Structure of domain e1upcF2

Domains in the same chain:

e1upcF2 F:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcF1 F:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcF3 F:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e1upcA2 A:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcA1 A:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcA3 A:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcB2 B:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcB1 B:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcB3 B:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcC2 C:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcC1 C:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcC3 C:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcD2 D:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcD1 D:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcD3 D:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcE2 E:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcE1 E:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcE3 E:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcF2 F:12-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1upcF1 F:198-374 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e1upcF3 F:375-572 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e1upcF2 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1upcE1 F:x,y,z->E:X,Y,Z Rossmann-related Interaction Interface Pymol
e1upcE3 F:x,y,z->E:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upcE2 F:x,y,z->E:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upcE2 F:x,y,z->E:-X,-Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upcE1 F:x,y,z->E:-X,-Y,Z Rossmann-related Interaction Interface Pymol
e1upcF2 F:x,y,z->F:-X,-Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1upcF2 F:-X,-Y,Z->F:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol