Domain ID e1upmE2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: RuBisCO_large
UID: 000487512
Type: Automatic domain
Parent: e5rubA2
Range: E:149-475
Ligands: CA CAP
PDB: 1upm
PDB Description: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
UniProt: P00875
Species: Spinacia oleracea

Structure of domain e1upmE2

Domains in the same chain:

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e1upmE1 E:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmE2 E:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e1upmB1 B:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmB2 B:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmC1 C:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmE1 E:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmE2 E:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmF1 F:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmH1 H:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmH2 H:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmI1 I:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmK1 K:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmK2 K:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmL1 L:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmL2 L:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmM1 M:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmO1 O:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmO2 O:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmP1 P:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmR1 R:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmR2 R:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmS1 S:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmT1 T:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e1upmV1 V:9-148 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e1upmV2 V:149-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e1upmW1 W:1-123 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit

Structural contacts of domain e1upmE2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1upmH2 E:X,Y,Z->H:x,y,z TIM barrels Interaction Interface Pymol
e1upmH1 E:X,Y,Z->H:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e1upmF1 E:X,Y,Z->F:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e1upmM1 E:X,Y,Z->M:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e1upmL2 E:X,Y,Z->L:x,y,z TIM barrels Interaction Interface Pymol
e1upmK2 E:X,Y,Z->K:x,y,z TIM barrels Interaction Interface Pymol
e1upmK1 E:X,Y,Z->K:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e1upmB1 E:x,y,z->B:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol