ECOD: domain e1vddA3

Domain ID e1vddA3

A: a/b three-layered sandwiches
X: HAD domain-like
H: HAD domain-related
T: Toprim domain
F: Toprim_4,RecR_C

UID:	000224316
Type:	Manual and representative domain
Range:	A:77-199
Ligands:	IMD
PDB:	1vdd
PDB Description:	Recombination protein recR
In assembly with:	e1vddB3
UniProt:	Q9ZNA2
Species:	Deinococcus radiodurans

Domains in the same chain:

Download Pymol

e1vddA1	A:1-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddA2	A:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddA3	A:77-199	HAD domain-like	HAD domain-related	Toprim domain

Domains in the same PDB:

e1vddA1	A:1-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddA2	A:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddA3	A:77-199	HAD domain-like	HAD domain-related	Toprim domain
e1vddB1	B:2-52	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddB2	B:53-75	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddB3	B:77-199	HAD domain-like	HAD domain-related	Toprim domain
e1vddC1	C:1-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddC2	C:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddC6	C:77-197	HAD domain-like	HAD domain-related	Toprim domain
e1vddD5	D:2-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddD4	D:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddD6	D:77-199	HAD domain-like	HAD domain-related	Toprim domain

Structural contacts of domain e1vddA3 of H-group "HAD domain-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vddC1	A:X,Y,Z->C:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1vddB3	A:X,Y,Z->B:x,y,z	HAD domain-related	Interaction Interface Pymol
e1vddA3	A:x,y,z->A:X,-Y,-Z	HAD domain-related	Interaction Interface Pymol
e1vddA1	A:x,y,z->A:X,-Y,-Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1vddA1	A:X,-Y,-Z->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1vddA3	A:X,-Y,-Z->A:x,y,z	HAD domain-related	Interaction Interface Pymol
e1vddD6	A:X,-Y,-Z->D:x,y,z	HAD domain-related	Interaction Interface Pymol
e1vddD5	A:X,-Y,-Z->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1vddC6	A:X,-Y,-Z->C:x,y,z	HAD domain-related	Interaction Interface Pymol
e1vddC1	A:X,-Y,-Z->C:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1vddD5	A:X,Y,Z->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol