| UID: | 000224316 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:77-199 |
| Ligands: | IMD |
| PDB: | 1vdd |
| PDB Description: | Recombination protein recR |
| In assembly with: | e1vddB3 |
| UniProt: | Q9ZNA2 |
| Species: | Deinococcus radiodurans |
Structure of domain e1vddA3 in assembly with e1vddB3
Domains in the same chain:
| e1vddA1 | A:1-53 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e1vddA2 | A:54-76 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e1vddA3 | A:77-199 | HAD domain-like | HAD domain-related | Toprim domain |
Domains in the same PDB:
Structural contacts of domain e1vddA3 of H-group "HAD domain-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1vddC1 | A:X,Y,Z->C:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1vddB3 | A:X,Y,Z->B:x,y,z | HAD domain-related | Interaction Interface Pymol |
| e1vddA3 | A:x,y,z->A:X,-Y,-Z | HAD domain-related | Interaction Interface Pymol |
| e1vddA1 | A:x,y,z->A:X,-Y,-Z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1vddA1 | A:X,-Y,-Z->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1vddA3 | A:X,-Y,-Z->A:x,y,z | HAD domain-related | Interaction Interface Pymol |
| e1vddD6 | A:X,-Y,-Z->D:x,y,z | HAD domain-related | Interaction Interface Pymol |
| e1vddD5 | A:X,-Y,-Z->D:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1vddC6 | A:X,-Y,-Z->C:x,y,z | HAD domain-related | Interaction Interface Pymol |
| e1vddC1 | A:X,-Y,-Z->C:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1vddD5 | A:X,Y,Z->D:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
