ECOD: domain e1vddD5

Domain ID e1vddD5

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: RecR_HhH

UID:	001278174
Type:	Automatic domain
Parent:	e1vddA1
Range:	D:2-53
Ligands:	IMD
PDB:	1vdd
PDB Description:	Recombination protein recR
UniProt:	Q9ZNA2
Species:	Deinococcus radiodurans

Domains in the same chain:

Download Pymol

e1vddD5	D:2-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddD4	D:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddD6	D:77-199	HAD domain-like	HAD domain-related	Toprim domain

Domains in the same PDB:

e1vddA1	A:1-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddA2	A:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddA3	A:77-199	HAD domain-like	HAD domain-related	Toprim domain
e1vddB1	B:2-52	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddB2	B:53-75	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddB3	B:77-199	HAD domain-like	HAD domain-related	Toprim domain
e1vddC1	C:1-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddC2	C:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddC6	C:77-197	HAD domain-like	HAD domain-related	Toprim domain
e1vddD5	D:2-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1vddD4	D:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e1vddD6	D:77-199	HAD domain-like	HAD domain-related	Toprim domain

Structural contacts of domain e1vddD5 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vddB3	D:x,y,z->B:X,Y,Z	HAD domain-related	Interaction Interface Pymol
e1vddB2	D:x,y,z->B:X,Y,Z	RING/U-box-like	Interaction Interface Pymol
e1vddB1	D:x,y,z->B:X,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1vddA3	D:x,y,z->A:X,-Y,-Z	HAD domain-related	Interaction Interface Pymol
e1vddB3	D:x,y,z->B:X,-Y,-Z	HAD domain-related	Interaction Interface Pymol
e1vddA3	D:x,y,z->A:X,Y,Z	HAD domain-related	Interaction Interface Pymol
e1vddC1	D:x,y,z->C:X-1/2,Y-1/2,Z	SAM/DNA-glycosylase	Interaction Interface Pymol