| UID: | 001278174 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1vddA1 |
| Range: | D:2-53 |
| Ligands: | IMD |
| PDB: | 1vdd |
| PDB Description: | Recombination protein recR |
| UniProt: | Q9ZNA2 |
| Species: | Deinococcus radiodurans |
Structure of domain e1vddD5
Domains in the same chain:
| e1vddD5 | D:2-53 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e1vddD4 | D:54-76 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e1vddD6 | D:77-199 | HAD domain-like | HAD domain-related | Toprim domain |
Domains in the same PDB:
Structural contacts of domain e1vddD5 of H-group "SAM/DNA-glycosylase":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1vddB3 | D:x,y,z->B:X,Y,Z | HAD domain-related | Interaction Interface Pymol |
| e1vddB2 | D:x,y,z->B:X,Y,Z | RING/U-box-like | Interaction Interface Pymol |
| e1vddB1 | D:x,y,z->B:X,Y,Z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1vddA3 | D:x,y,z->A:X,-Y,-Z | HAD domain-related | Interaction Interface Pymol |
| e1vddB3 | D:x,y,z->B:X,-Y,-Z | HAD domain-related | Interaction Interface Pymol |
| e1vddA3 | D:x,y,z->A:X,Y,Z | HAD domain-related | Interaction Interface Pymol |
| e1vddC1 | D:x,y,z->C:X-1/2,Y-1/2,Z | SAM/DNA-glycosylase | Interaction Interface Pymol |
