ECOD: domain e1vf5A1

Domain ID e1vf5A1

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A: alpha bundles
X: Transmembrane heme-binding four-helical bundle
H: Transmembrane heme-binding four-helical bundle
T: Transmembrane di-heme cytochromes
F: Cytochrome_B

UID:	000058208
Type:	Automatic domain
Parent:	e1ppjC2
Range:	A:13-214
Ligands:	BCR CLA HEM OPC PL9 TDS
PDB:	1vf5
PDB Description:	CYTOCHROME B6
UniProt:	P83791
Hsap BLAST neighbor:	P00156
Species:	Mastigocladus laminosus

Domains in the same chain:

e1vf5A1	A:13-214	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes

Domains in the same PDB:

e1vf5A1	A:13-214	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e1vf5B1	B:18-155	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1vf5C1	C:1-169,C:232-249	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e1vf5C3	C:170-231	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e1vf5C2	C:251-286	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
e1vf5D5	D:12-47	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e1vf5D6	D:48-106,D:148-179	ISP domain	ISP domain	ISP domain
e1vf5D4	D:107-147	Trm112p-like	Trm112p-like	Trm112p-like
e1vf5E1	E:1-32	PetL subunit of the cytochrome b6f complex	PetL subunit of the cytochrome b6f complex	PetL subunit of the cytochrome b6f complex
e1vf5F1	F:1-32	PetM subunit of the cytochrome b6f complex	PetM subunit of the cytochrome b6f complex	PetM subunit of the cytochrome b6f complex
e1vf5H1	H:3-29	PetN subunit of the cytochrome b6f complex	PetN subunit of the cytochrome b6f complex	PetN subunit of the cytochrome b6f complex
e1vf5N1	N:13-214	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Transmembrane di-heme cytochromes
e1vf5O1	O:18-155	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1vf5P1	P:1-169,P:232-249	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e1vf5P3	P:170-231	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e1vf5P2	P:251-286	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
e1vf5Q5	Q:12-47	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor	iron-sulfur subunit (ISP) transmembrane anchor
e1vf5Q6	Q:48-106,Q:148-179	ISP domain	ISP domain	ISP domain
e1vf5Q4	Q:107-147	Trm112p-like	Trm112p-like	Trm112p-like
e1vf5R1	R:1-32	PetL subunit of the cytochrome b6f complex	PetL subunit of the cytochrome b6f complex	PetL subunit of the cytochrome b6f complex
e1vf5S1	S:1-32	PetM subunit of the cytochrome b6f complex	PetM subunit of the cytochrome b6f complex	PetM subunit of the cytochrome b6f complex
e1vf5U1	U:3-29	PetN subunit of the cytochrome b6f complex	PetN subunit of the cytochrome b6f complex	PetN subunit of the cytochrome b6f complex

Structural contacts of domain e1vf5A1 of H-group "Transmembrane heme-binding four-helical bundle":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vf5B1	A:X,Y,Z->B:x,y,z	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	Interaction Interface Pymol
e1vf5N1	A:X,Y,Z->N:x,y,z	Transmembrane heme-binding four-helical bundle	Interaction Interface Pymol
e1vf5E1	A:X,Y,Z->E:x,y,z	PetL subunit of the cytochrome b6f complex	Interaction Interface Pymol
e1vf5D5	A:X,Y,Z->D:x,y,z	iron-sulfur subunit (ISP) transmembrane anchor	Interaction Interface Pymol
e1vf5C2	A:X,Y,Z->C:x,y,z	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	Interaction Interface Pymol
e1vf5C1	A:X,Y,Z->C:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e1vf5P1	A:X-Y,X-1,Z+1/6->P:x,y,z	Immunoglobulin-related	Interaction Interface Pymol