ECOD: domain e1vpkA3

Domain ID e1vpkA3

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: DNA_pol3_beta_3

UID:	000005979
Type:	Manual and representative domain
Range:	A:244-366
PDB:	1vpk
PDB Description:	DNA polymerase III, beta subunit
UniProt:	Q9WYA0
Species:

Domains in the same chain:

Download Pymol

e1vpkA1	A:1-120	DNA clamp	DNA clamp	DNA clamp
e1vpkA2	A:121-243	DNA clamp	DNA clamp	DNA clamp
e1vpkA3	A:244-366	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e1vpkA1	A:1-120	DNA clamp	DNA clamp	DNA clamp
e1vpkA2	A:121-243	DNA clamp	DNA clamp	DNA clamp
e1vpkA3	A:244-366	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e1vpkA3 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vpkA1	A:x,y,z->A:-Y+1,-X+1,-Z	DNA clamp	Interaction Interface Pymol
e1vpkA1	A:-Y+1,-X+1,-Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e1vpkA3	A:x,y,z->A:-X+1,-Y,Z	DNA clamp	Interaction Interface Pymol
e1vpkA3	A:-X+1,-Y,Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e1vpkA1	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/2	DNA clamp	Interaction Interface Pymol
e1vpkA2	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/2	DNA clamp	Interaction Interface Pymol
e1vpkA2	A:x,y,z->A:Y,X,-Z	DNA clamp	Interaction Interface Pymol
e1vpkA2	A:Y,X,-Z->A:x,y,z	DNA clamp	Interaction Interface Pymol