ECOD: domain e1vq421

Domain ID e1vq421

A: extended segments
X: Ribosomal protein L39e
H: Ribosomal protein L39e
T: Ribosomal protein L39e
F: Ribosomal_L39

UID:	000060753
Type:	Automatic domain
Parent:	e1vqo21
Range:	2:1-49
Ligands:	CL MG NA
PDB:	1vq4
PDB Description:	50S RIBOSOMAL PROTEIN L39E
UniProt:	P22452
Species:	Haloarcula marismortui

Domains in the same chain:

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e1vq421	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e

Domains in the same PDB:

e1vq411	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vq421	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e1vq431	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vq4A1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vq4A2	A:91-237	SH3	SH3	SH3
e1vq4B1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e1vq4C1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1vq4D1	D:10-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1vq4E1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vq4E2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vq4F1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1vq4G1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e1vq4H1	H:1-163	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e1vq4I1	I:71-140	HTH	HTH	Ribosomal protein L11, C-terminal domain
e1vq4J1	J:9-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1vq4K1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vq4L1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vq4M1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vq4N1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1vq4O1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vq4P1	P:1-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e1vq4P2	P:55-142	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e1vq4Q1	Q:1-95	SH3	SH3	SH3
e1vq4R1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1vq4S1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vq4T1	T:1-119	SH3	SH3	SH3
e1vq4U1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vq4V1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1vq4W1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1vq4X1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e1vq4Y1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e1vq4Z1	Z:10-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e1vq421 of H-group "Ribosomal protein L39e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vq4S1	2:x,y,z->S:X,Y,Z	Ribosomal proteins S24e, L23 and L15e	Interaction Interface Pymol
e1vq411	2:x,y,z->1:X,Y,Z	Rubredoxin-related	Interaction Interface Pymol