Domain ID e1vq6B1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: Alanine racemase-C
  • F: Ribosomal_L3
UID: 000021719
Type: Automatic domain
Parent: e1vqoB1
Range: B:1-337
Ligands: CL MG NA
PDB: 1vq6
PDB Description: 50S RIBOSOMAL PROTEIN L3P
UniProt: P20279
Hsap BLAST neighbor: P39023
Species: Haloarcula marismortui

Structure of domain e1vq6B1

Domains in the same chain:

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e1vq6B1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C

Domains in the same PDB:

e1vq611 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vq621 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1vq631 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vq6A1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vq6A2 A:91-237 SH3 SH3 SH3
e1vq6B1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1vq6C1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vq6D1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vq6E1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vq6E2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vq6F1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1vq6G1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1vq6H1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1vq6I1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e1vq6J1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vq6K1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vq6L1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vq6M1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vq6N1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vq6O1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vq6P1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1vq6P2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1vq6Q1 Q:1-95 SH3 SH3 SH3
e1vq6R1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vq6S1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vq6T1 T:1-119 SH3 SH3 SH3
e1vq6U1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vq6V1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vq6W1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vq6X1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1vq6Y1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1vq6Z1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1vq6B1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vq6K1 B:X,Y,Z->K:x,y,z Ribosomal protein L14-related Interaction Interface Pymol
e1vq6J1 B:X,Y,Z->J:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e1vq6U1 B:X,Y,Z->U:x,y,z LIM domain-like Interaction Interface Pymol
e1vq6D1 B:-X+1/2,Y-1/2,-Z+1/2->D:x,y,z Ribosomal protein L5 Interaction Interface Pymol