Domain ID e1vqlD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000067605
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-174
Ligands: CL NA
PDB: 1vql
PDB Description: 50S ribosomal protein L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e1vqlD1

Domains in the same chain:

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e1vqlD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e1vql11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vql21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1vql31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vqlA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vqlA2 A:91-237 SH3 SH3 SH3
e1vqlB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1vqlC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vqlD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vqlE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqlE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vqlF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1vqlG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1vqlH1 H:1-163 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1vqlI1 I:71-140 HTH HTH Ribosomal protein L11, C-terminal domain
e1vqlJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vqlK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vqlL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqlM1 M:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqlN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vqlO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1vqlP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1vqlP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1vqlQ1 Q:1-95 SH3 SH3 SH3
e1vqlR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vqlS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vqlT1 T:1-119 SH3 SH3 SH3
e1vqlU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vqlV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vqlW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vqlX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1vqlY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1vqlZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1vqlD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vqlN1 D:X,Y,Z->N:x,y,z Ribonuclease H-like Interaction Interface Pymol
e1vqlB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 RIFT-related Interaction Interface Pymol