ECOD: domain e1vqoD1

Domain ID e1vqoD1

A: a+b two layers
X: Ribosomal protein L5
H: Ribosomal protein L5
T: Ribosomal protein L5
F: Ribosomal_L5,Ribosomal_L5_C

UID:	000005525
Type:	Manual and representative domain
Range:	D:10-107,D:128-174
Ligands:	CL NA
PDB:	1vqo
PDB Description:	50S RIBOSOMAL PROTEIN L5P
UniProt:	P14124
Hsap BLAST neighbor:	P62913
Species:	Haloarcula marismortui

Domains in the same chain:

Download Pymol

e1vqoD1	D:10-107,D:128-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5

Domains in the same PDB:

e1vqo11	1:1-56	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqo21	2:1-49	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e1vqo31	3:1-92	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vqoA1	A:1-90	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1vqoA2	A:91-237	SH3	SH3	SH3
e1vqoB1	B:1-337	cradle loop barrel	RIFT-related	Alanine racemase-C
e1vqoC1	C:1-246	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e1vqoD1	D:10-107,D:128-174	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e1vqoE1	E:1-79	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqoE2	E:80-172	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e1vqoF1	F:1-119	Bacillus chorismate mutase-like	L30e-like	L30e-like
e1vqoG1	G:12-29,G:63-73	Alpha-beta plaits	Ribosomal protein L10-like	Ribosomal protein L10-like
e1vqoH1	H:1-163	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e1vqoI1	I:71-140	HTH	HTH	Ribosomal protein L11, C-terminal domain
e1vqoJ1	J:9-145	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e1vqoK1	K:1-132	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e1vqoL1	L:1-150	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqoM1	M:1-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqoN1	N:1-186	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1vqoO1	O:1-115	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e1vqoP1	P:1-55	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e1vqoP2	P:56-143	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e1vqoQ1	Q:1-95	SH3	SH3	SH3
e1vqoR1	R:1-150	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e1vqoS1	S:1-81	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e1vqoT1	T:1-119	SH3	SH3	SH3
e1vqoU1	U:4-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e1vqoV1	V:1-65	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)
e1vqoW1	W:1-154	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e1vqoX1	X:7-88	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e1vqoY1	Y:95-236	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e1vqoZ1	Z:10-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e1vqoD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vqoN1	D:X,Y,Z->N:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e1vqoB1	D:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2	RIFT-related	Interaction Interface Pymol