ECOD: domain e1vr5A2

Domain ID e1vr5A2

A: a+b two layers
X: Alpha-beta plaits
H: Oligo-peptide binding protein (OPPA) insertion domain
T: Oligo-peptide binding protein (OPPA) insertion domain
F: SBP_bac_5

UID:	001019371
Type:	Manual and representative domain
Range:	A:60-161
Ligands:	CL EDO
PDB:	1vr5
PDB Description:	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
UniProt:	Q9X0V0
Species:

Domain
In chain context
In PDB context

Structure of domain e1vr5A2

Domains in the same chain:

Download Pymol

e1vr5A3	A:23-59,A:162-271,A:516-557	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5A2	A:60-161	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e1vr5A4	A:272-515	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e1vr5A3	A:23-59,A:162-271,A:516-557	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5A2	A:60-161	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e1vr5A4	A:272-515	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5B3	B:0-59,B:162-271,B:516-557	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5B1	B:60-161	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e1vr5B2	B:272-515	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e1vr5A2 of H-group "Oligo-peptide binding protein (OPPA) insertion domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vr5A3	A:x,y,z->A:-X+1,-Y,Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e1vr5A3	A:-X+1,-Y,Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e1vr5B1	A:X,Y,Z->B:x,y,z	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol