ECOD: domain e1vr5B2

Domain ID e1vr5B2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: SBP_bac_5

UID:	001523023
Type:	Automatic domain
Parent:	e1vr5A4
Range:	B:272-515
Ligands:	EDO NA
PDB:	1vr5
PDB Description:	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
UniProt:	Q9X0V0
Species:

Domain
In chain context
In PDB context

Structure of domain e1vr5B2

Domains in the same chain:

Download Pymol

e1vr5B3	B:0-59,B:162-271,B:516-557	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5B1	B:60-161	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e1vr5B2	B:272-515	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e1vr5A3	A:23-59,A:162-271,A:516-557	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5A2	A:60-161	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e1vr5A4	A:272-515	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5B3	B:0-59,B:162-271,B:516-557	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e1vr5B1	B:60-161	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e1vr5B2	B:272-515	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e1vr5B2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vr5A3	B:x,y,z->A:X,Y,Z-1	Periplasmic binding protein-like II	Interaction Interface Pymol
e1vr5A4	B:x,y,z->A:-X+3/2,Y-1/2,-Z+2	Periplasmic binding protein-like II	Interaction Interface Pymol
e1vr5A3	B:X-1/2,-Y+1/2,-Z+2->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol