Domain ID e1vrqA5

Download files:
  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: Fer2_4
UID: 001823573
Type: Automatic domain
Parent: e3c8yA4
Range: A:1-127
Ligands: SO4
PDB: 1vrq
PDB Description: SARCOSINE OXIDASE ALPHA SUBUNIT
UniProt: Q50LF0
Species: Corynebacterium sp. U-96

Structure of domain e1vrqA5

Domains in the same chain:

Download Pymol

e1vrqA5 A:1-127 beta-Grasp Ubiquitin-related Ubiquitin-like
e1vrqA6 A:128-480 Rossmann-like Rossmann-related Nucleotide-binding domain
e1vrqA4 A:481-537 HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin
e1vrqA8 A:556-722 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e1vrqA7 A:723-863 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e1vrqA3 A:865-963 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e1vrqA5 A:1-127 beta-Grasp Ubiquitin-related Ubiquitin-like
e1vrqA6 A:128-480 Rossmann-like Rossmann-related Nucleotide-binding domain
e1vrqA4 A:481-537 HTH bacterioferritin-associated ferredoxin bacterioferritin-associated ferredoxin
e1vrqA8 A:556-722 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e1vrqA7 A:723-863 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e1vrqA3 A:865-963 cradle loop barrel RIFT-related Aminomethyltransferase beta-barrel domain
e1vrqB2 B:1-241,B:331-402 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e1vrqB3 B:242-332 FAD-linked reductases, C-terminal domain-like FAD-linked reductases-C FAD-linked reductases-C
e1vrqC1 C:6-200 Alpha-beta plaits Aminomethyltransferase folate-binding domain Aminomethyltransferase folate-binding domain
e1vrqD1 D:1-91 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1vrqA5 of H-group "Ubiquitin-related":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vrqB3 A:X,Y,Z->B:x,y,z FAD-linked reductases-C Interaction Interface Pymol
e1vrqC1 A:X,Y,Z->C:x,y,z Aminomethyltransferase folate-binding domain Interaction Interface Pymol
e1vrqA5 A:x,y,z->A:-X,-X+Y,-Z+1/3 Ubiquitin-related Interaction Interface Pymol
e1vrqA5 A:x,y,z->A:-X,-X+Y,-Z+1/3 Ubiquitin-related Interaction Interface Pymol
e1vrqA5 A:-X,-X+Y,-Z+1/3->A:x,y,z Ubiquitin-related Interaction Interface Pymol
e1vrqA5 A:-X,-X+Y,-Z+1/3->A:x,y,z Ubiquitin-related Interaction Interface Pymol
e1vrqC1 A:-X,-X+Y,-Z+1/3->C:x,y,z Aminomethyltransferase folate-binding domain Interaction Interface Pymol