ECOD: domain e1vrqB2

Domain ID e1vrqB2

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: FAD/NAD(P)-binding domain
F: DAO

UID:	001270100
Type:	Automatic domain
Parent:	e3atqA1
Range:	B:1-241,B:331-402
Ligands:	DMG FAD FMN SO4
PDB:	1vrq
PDB Description:	SARCOSINE OXIDASE BETA SUBUNIT
UniProt:	Q50LF2
Hsap BLAST neighbor:	Q9UL12
Species:	Corynebacterium sp. U-96

Domain
In chain context
In PDB context

Structure of domain e1vrqB2

Domains in the same chain:

Download Pymol

e1vrqB2	B:1-241,B:331-402	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e1vrqB3	B:242-332	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C

Domains in the same PDB:

e1vrqA5	A:1-127	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e1vrqA6	A:128-480	Rossmann-like	Rossmann-related	Nucleotide-binding domain
e1vrqA4	A:481-537	HTH	bacterioferritin-associated ferredoxin	bacterioferritin-associated ferredoxin
e1vrqA8	A:556-722	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e1vrqA7	A:723-863	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e1vrqA3	A:865-963	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e1vrqB2	B:1-241,B:331-402	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e1vrqB3	B:242-332	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e1vrqC1	C:6-200	Alpha-beta plaits	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
e1vrqD1	D:1-91	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e1vrqB2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3atqA1	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1vrqA4	B:x,y,z->A:X,Y,Z	bacterioferritin-associated ferredoxin	Interaction Interface Pymol
e1vrqA3	B:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e1vrqD1	B:X,Y,Z->D:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1vrqD1	B:X-Y,X,Z-1/6->A:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1vrqD1	B:x,y,z->A:-X,-X+Y,-Z+1/3	Rubredoxin-related	Interaction Interface Pymol
e1vrqB2	B:x,y,z->B:-X+Y,Y,-Z+1/2	Rossmann-related	Interaction Interface Pymol
e1vrqB2	B:-X+Y,Y,-Z+1/2->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e1vrqC1	B:X-Y,X,Z-1/6->C:x,y,z	Aminomethyltransferase folate-binding domain	Interaction Interface Pymol
e1vrqB2	B:x,y,z->B:-Y+1,-X+1,-Z+1/6	Rossmann-related	Interaction Interface Pymol
e1vrqB2	B:-Y+1,-X+1,-Z+1/6->B:x,y,z	Rossmann-related	Interaction Interface Pymol