Domain ID e1vsaD1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000320249
Type: Automatic domain
Parent: e1dmgA1
Range: D:4-197
PDB: 1vsa
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e1vsaD1

Domains in the same chain:

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e1vsaD1 D:4-197 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e1vsaa1 a:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e1vsaA1 A:6-64,A:162-228 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e1vsab1 b:2-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e1vsaB2 B:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vsaB1 B:127-273 SH3 SH3 SH3
e1vsaD1 D:4-197 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vsaE1 E:3-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vsaF1 F:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vsaF2 F:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vsaG2 G:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e1vsaG1 G:54-148 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e1vsaH1 H:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vsaI1 I:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vsaL1 L:14-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e1vsaO1 O:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e1vsaP1 P:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e1vsaQ1 Q:2-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vsaR1 R:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vsaS1 S:6-102 SH3 SH3 SH3
e1vsaT1 T:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vsaT2 T:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e1vsaU1 U:20-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e1vsaV1 V:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e1vsaW1 W:12-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vsaX1 X:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vsaY1 Y:5-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vsaZ1 Z:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34

Structural contacts of domain e1vsaD1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 D:X,Y,Z->J:x,y,z Ribosomal protein L4 Interaction Interface Pymol