Domain ID e1vspD1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000331396
Type: Automatic domain
Parent: e1dmgA1
Range: D:4-197
PDB: 1vsp
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e1vspD1

Domains in the same chain:

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e1vspD1 D:4-197 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e1vspa1 a:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e1vspA1 A:6-64,A:162-228 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e1vspb1 b:2-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e1vspB1 B:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vspB2 B:127-273 SH3 SH3 SH3
e1vspD1 D:4-197 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vspE1 E:3-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vspF1 F:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vspF2 F:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vspG4 G:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e1vspG3 G:53-148 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e1vspH1 H:24-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vspI1 I:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vspL1 L:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e1vspO1 O:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e1vspP1 P:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e1vspQ1 Q:2-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vspR1 R:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vspS2 S:1-103 SH3 SH3 SH3
e1vspT1 T:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vspT2 T:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e1vspU1 U:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e1vspV1 V:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e1vspW1 W:1-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vspX1 X:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vspY1 Y:5-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vspZ1 Z:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34

Structural contacts of domain e1vspD1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 D:X,Y,Z->J:x,y,z Ribosomal protein L4 Interaction Interface Pymol